Basic Information
Locus ID:
Ftri16G18592
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 104236063 | 104238657 | - | Ftri16G18592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 90,007.49 Da | 34.59 | 104.19 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 646 | 701 | 3.6E-10 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 266 | 288 | 0.065 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 80 | 5.7E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 4.1E-12 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 120 | 181 | 5.6E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 194 | 252 | 1.2E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 344 | 732 | 6.43E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 65 | 379 | 4.99E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 478 | 766 | 1.2E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 331 | 477 | 2.9E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 330 | 3.6E-72 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 216 | 248 | 650.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 664 | 685 | 560.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 264 | 290 | 6.2 | - |
| SMART | SM00369 | LRR_typ_2 | 712 | 735 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 216 | 240 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 288 | 312 | 250.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 168 | 197 | 83.0 | - |
| SMART | SM00369 | LRR_typ_2 | 551 | 574 | 220.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 688 | 714 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 575 | 599 | 4.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 664 | 687 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 264 | 287 | 7.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 688 | 711 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 168 | 192 | 23.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 527 | 549 | 470.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 551 | 577 | 250.0 | - |
| SMART | SM00369 | LRR_typ_2 | 527 | 550 | 160.0 | IPR003591 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 267 | 280 | 3.6E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 712 | 725 | 3.6E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_035831396.1 | receptor-like protein 46 [Helianthus annuus] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5N6N4I4 | LRRNT_2 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_24359 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |