Basic Information
Locus ID:
Ftri16G18463
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 4218937 | 4227665 | - | Ftri16G18463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 121,916.60 Da | 40.94 | 79.90 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 443 | 478 | 0.0043 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 878 | 1070 | 6.8E-11 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 476 | 930 | 1.18E-39 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 335 | 521 | 2.01E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 504 | 679 | 1.7E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 758 | 1075 | 9.8E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 306 | 503 | 1.7E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 6.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 330 | 369 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 852 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 855 | 895 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 430 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 477 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 898 | 937 | 0.37 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 525 | 568 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 974 | 1015 | 21.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 481 | 522 | 0.093 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1075 | 1106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_022039236.1 | protein TOPLESS [Helianthus annuus] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A251USE5 | Putative transducin family protein / WD-40 repeat family protein OS=Helianthus annuus OX=4232 GN=WSIP1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology