Basic Information
Locus ID:
Ftri16G15953
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 101213745 | 101216028 | + | Ftri16G15953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 39,696.38 Da | 54.62 | 69.94 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 301 | 341 | 2.18635E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 299 | 346 | 4.1E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 301 | 346 | 4.35E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 351 | 4.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 340 | 5.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 302 | 341 | 11.279532 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022000758.1 | probable E3 ubiquitin-protein ligase LOG2 [Helianthus annuus] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SQV1 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0399721 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology