Basic Information
Locus ID:
Ftri16G14674
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 69566052 | 69573675 | + | Ftri16G14674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 163,114.22 Da | 39.63 | 106.09 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 893 | 1186 | 9.75957E-95 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 587 | 787 | 6.50501E-107 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1209 | 1429 | 1.03835E-123 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 297 | 561 | 8.15277E-84 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 605 | 739 | 5.3E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1228 | 1376 | 8.1E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 910 | 1138 | 2.3E-31 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 296 | 487 | 1.8E-12 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 290 | 561 | 2.49E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 581 | 806 | 1.36E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1202 | 1441 | 5.43E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 903 | 1193 | 2.09E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 566 | 829 | 7.3E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1194 | 1447 | 3.9E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 856 | 1192 | 9.8E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 565 | 1.0E-37 | IPR036640 |
| SMART | SM00382 | AAA_5 | 614 | 787 | 1.7E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1237 | 1429 | 1.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 895 | 1174 | 33.107178 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 587 | 810 | 22.095615 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 296 | 553 | 23.735176 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1211 | 1445 | 16.42671 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 712 | 726 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_022016233.1 | putative ABC transporter C family member 15 [Helianthus annuus] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251RXD0 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=ATMRP9 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology