Basic Information
Locus ID:
Ftri16G13925
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 74238263 | 74240044 | + | Ftri16G13925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 42,437.75 Da | 29.22 | 81.13 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 33 | 305 | 4.0E-58 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 30 | 272 | 2.11E-58 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 47 | 262 | 4.3E-72 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 263 | 288 | 4.3E-72 | IPR029070 |
| SMART | SM00636 | 2g34 | 30 | 329 | 6.3E-55 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 30 | 380 | 49.617134 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 135 | 143 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19800.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_022031071.1 | class V chitinase CHIT5 [Helianthus annuus] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251V734 | Putative glycosyl hydrolase family protein with chitinase insertion domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0075501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology