halophFGD

Basic Information

Locus ID: Ftri16G09289

Species & Taxonomic ID: Flaveria trinervia & 4227

Genome Assembly: GCA_025506515.1

Description: LEC14B homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr16	80712231	80713070	+	Ftri16G09289

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.19	13,945.67 Da	46.04	76.45	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	26	114	1.22E-14	IPR036322
Gene3D	G3DSA:2.130.10.10	-	3	120	1.2E-11	IPR015943
SMART	SM00320	WD40_4	74	112	0.16	IPR001680
SMART	SM00320	WD40_4	26	71	0.74	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11801 (DDB1- and CUL4-associated factor 11)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G03020.1	transducin family protein / WD-40 repeat family protein.	0
RefSeq	XP_022028093.1	LEC14B homolog [Helianthus annuus]	0
Swiss-Prot	O24467	LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1	0
TrEMBL	A0A251V7U5	Putative apoptotic protease-activating factor 1 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0070771 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg35799
Apiaceae	Apium graveolens	1	Ag9G01819
Asteraceae	Flaveria trinervia	1	Ftri16G09289
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0062710.1
Poaceae	Oryza coarctata	1	Oco09G002090