Basic Information
Locus ID:
Ftri16G08677
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 100675218 | 100688370 | - | Ftri16G08677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 57,052.38 Da | 37.56 | 78.69 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 83 | 129 | 1.6E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 143 | 194 | 5.55E-12 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 226 | 285 | 1.06E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 225 | 6.3E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 288 | 2.9E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 230 | 286 | 6.4E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 147 | 188 | 2.2E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 145 | 190 | 9.623499 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 148 | 187 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_035837908.1 | increased DNA methylation 1 [Helianthus annuus] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251SR23 | Putative zinc finger, RING/FYVE/PHD-type, Acyl-CoA N-acyltransferase, Jas TPL-binding domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0400461 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology