Basic Information
Locus ID:
Ftri16G01695
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 101954276 | 101959643 | - | Ftri16G01695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 95,737.34 Da | 38.96 | 86.92 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 684 | 839 | 2.53676E-55 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 268 | 838 | 1.5E-72 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 265 | 840 | 2.94E-93 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 258 | 454 | 1.9E-45 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 587 | 841 | 1.5E-53 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 267 | 841 | 48.958309 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 268 | 283 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 785 | 802 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_022000664.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Helianthus annuus] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6LE80 | USP domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_43866 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology