Basic Information
Locus ID:
Ftri16G00364
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ankyrin repeats (3 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 13787487 | 13788089 | + | Ftri16G00364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 21,767.30 Da | 46.55 | 66.80 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 32 | 76 | 2.92958E-26 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 34 | 74 | 3.4E-10 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 31 | 87 | 9.03E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 99 | 3.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 34 | 74 | 9.1E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 75 | 13.507235 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 49 | 58 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022039142.1 | E3 ubiquitin-protein ligase RNF185 [Helianthus annuus] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251UTK2 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0155861 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology