Basic Information
Locus ID:
Ftri15G31995
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 121992006 | 122001595 | + | Ftri15G31995 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 98,290.32 Da | 37.71 | 100.32 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08752 | Coatomer gamma subunit appendage platform subdomain | 621 | 766 | 2.4E-53 | IPR013040 |
| Pfam | PF01602 | Adaptin N terminal region | 28 | 539 | 8.8E-131 | IPR002553 |
| Pfam | PF16381 | Coatomer subunit gamma-1 C-terminal appendage platform | 769 | 883 | 2.1E-36 | IPR032154 |
| SUPERFAMILY | SSF49348 | Clathrin adaptor appendage domain | 613 | 770 | 2.98E-53 | IPR013041 |
| SUPERFAMILY | SSF55711 | Subdomain of clathrin and coatomer appendage domain | 771 | 883 | 9.81E-33 | IPR009028 |
| SUPERFAMILY | SSF48371 | ARM repeat | 28 | 560 | 7.2E-93 | IPR016024 |
| Gene3D | G3DSA:3.30.310.10 | - | 768 | 884 | 5.8E-37 | IPR012295 |
| Gene3D | G3DSA:2.60.40.1480 | Coatomer, gamma subunit, appendage domain | 614 | 767 | 1.6E-54 | IPR037067 |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 550 | 2.0E-5 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 22 | 315 | 2.3E-108 | IPR011989 |
| PIRSF | PIRSF037093 | Gamma-COP | 6 | 884 | 0.0 | IPR017106 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 615 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34450.1 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative. | 0 |
| RefSeq | XP_022017067.1 | coatomer subunit gamma-2 [Helianthus annuus] | 0 |
| Q6Z382 | Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0201100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6LXZ1 | Coatomer subunit gamma OS=Mikania micrantha OX=192012 GN=E3N88_34385 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1001, jg28754, jg30297 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26416 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010252 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12456, Sbi_jg45861 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20218 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022435 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl37311, Sgl56092, Sgl61425, Sgl61660, Sgl79840, Sgl82290 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016541, gene:ENSEOMG00000038176 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0007780, CQ.Regalona.r1.9AG0016730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30051960, pistato.v30114190 |
| Apiaceae | Apium graveolens | 2 | Ag7G01219, Ag7G01704 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G009530, scaffold027940G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702706, gene-LOC103705392 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.680.V1.1, AsparagusV1_07.3158.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G31995, Ftri4G05415 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34450.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022539m.g.v1.0, Thhalv10024368m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g29400.v2.2, Sp7g32250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g020670.2N, BniB03g063500.2N, BniB05g003840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0089 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0105 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g14040, gene.Cymno09g06880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0055s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.125 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007530 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G10390, Lb2G13464, Lb3G17243, Lb6G29904 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.539, BH03.645, CH01.5033, CH03.735, Contig192.65 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0239910, gene-QOZ80_3BG0288120 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0044090.2, HORVU.MOREX.r3.4HG0394090.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042094, gene-QYE76_069572 |
| Poaceae | Oryza coarctata | 4 | Oco05G007050, Oco06G007280, Oco13G003410, Oco14G003770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g12590.1, LOC_Os07g10150.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G428000, gene-BS78_02G072000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101907, Pt_Chr0101934, Pt_Chr0303791 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G000770, Chr07G001130, Chr19G016530, Chr24G003290 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G290200, Tel4E01G403500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024120, gene_TRIDC1BG029220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G158700.1, TraesCS1B02G174700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb009810_P001, Zm00001eb116280_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2369, nbis-gene-26699, nbis-gene-35552 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1711, Zma_g4888, Zma_g6158 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.378, evm.TU.LG08.1840, evm.TU.LG09.1617 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26390, gene.Posoc04g07650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2279, evm.TU.Scaffold_2_RagTag.225 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4982 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14095 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3281, nbisL1-mrna-9898 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.818, evm.TU.utg000016l.93 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005271, Maker00016237 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14742, nbisL1-mrna-4651 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1263, nbisL1-mrna-22419 |
| Salicaceae | Populus euphratica | 2 | populus_peu08884, populus_peu36465 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599161 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003036 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16832, gene_8727 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0481, TC12G1041 |
| Zosteraceae | Zostera marina | 2 | Zosma04g03130.v3.1, Zosma06g02520.v3.1 |