Basic Information
Locus ID:
Ftri15G25772
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 13745675 | 13750745 | - | Ftri15G25772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 71,123.70 Da | 38.56 | 98.74 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 264 | 306 | 1.32532E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 382 | 421 | 3.4E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 465 | 503 | 9.4E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 547 | 586 | 7.4E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 260 | 330 | 1.8E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 352 | 633 | 2.46E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 335 | 4.48E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 349 | 628 | 8.4E-57 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 333 | 7.5E-33 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 120 | 2.2E-8 | IPR036537 |
| SMART | SM00185 | arm_5 | 505 | 545 | 20.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 8.2E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 382 | 422 | 1.4E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 504 | 0.25 | IPR000225 |
| SMART | SM00185 | arm_5 | 423 | 463 | 0.13 | IPR000225 |
| SMART | SM00185 | arm_5 | 546 | 586 | 12.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 44.274494 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 393 | 435 | 11.1474 | IPR000225 |
| Coils | Coil | Coil | 100 | 120 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_022037275.1 | U-box domain-containing protein 13 [Helianthus annuus] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251ULK9 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=PUB13 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology