Basic Information
Locus ID:
Ftri15G22692
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 104347971 | 104354289 | + | Ftri15G22692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 82,782.45 Da | 54.13 | 64.38 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 369 | 396 | 1.5E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 335 | 363 | 2.3E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 328 | 364 | 1.49E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 366 | 397 | 2.2E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 327 | 365 | 7.5E-17 | - |
| SMART | SM00547 | zf_4 | 337 | 361 | 2.6E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 370 | 394 | 0.075 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 335 | 364 | 10.20666 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 368 | 397 | 9.224238 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 339 | 358 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 372 | 391 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 579 | - | - |
| Coils | Coil | Coil | 58 | 78 | - | - |
| Coils | Coil | Coil | 656 | 676 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021993772.1 | zinc finger protein VAR3, chloroplastic [Helianthus annuus] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251TC65 | Putative zinc finger, RanBP2-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0339591 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology