Basic Information
Locus ID:
Ftri15G22617
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 26842914 | 26844164 | + | Ftri15G22617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 39,881.14 Da | 42.63 | 73.64 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 351 | 8.07373E-135 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 28 | 345 | 6.2E-74 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 345 | 1.71E-70 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 251 | 316 | 1.83E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 41 | 346 | 8.1E-103 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 250 | 316 | 8.1E-103 | IPR029070 |
| SMART | SM00636 | 2g34 | 25 | 345 | 1.6E-93 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 25 | 360 | 70.036835 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 132 | 140 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_022037814.1 | class V chitinase CHIT5a [Helianthus annuus] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251URB4 | Putative glycoside hydrolase family 18, catalytic domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0141461 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology