Basic Information
Locus ID:
Ftri15G19944
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 115195766 | 115200379 | + | Ftri15G19944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 133,086.61 Da | 36.84 | 107.47 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 977 | 1179 | 1.41281E-102 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 402 | 602 | 2.06505E-107 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 112 | 376 | 4.50901E-77 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 696 | 959 | 2.1967E-66 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 996 | 1126 | 1.9E-25 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 698 | 918 | 2.0E-18 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 420 | 554 | 6.8E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 113 | 335 | 4.5E-9 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 972 | 1187 | 5.53E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 698 | 967 | 1.16E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 399 | 624 | 7.79E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 101 | 381 | 4.71E-22 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 658 | 964 | 1.2E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 965 | 1197 | 1.5E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 80 | 380 | 1.9E-35 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 381 | 648 | 4.4E-72 | IPR027417 |
| SMART | SM00382 | AAA_5 | 429 | 602 | 1.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1005 | 1172 | 3.8E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 981 | 1195 | 16.673473 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 402 | 625 | 21.882198 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 111 | 368 | 21.493427 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 699 | 919 | 27.513258 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 527 | 541 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021993290.1 | ABC transporter C family member 3 [Helianthus annuus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251T9I0 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0333961 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology