Basic Information
Locus ID:
Ftri15G18830
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 28272599 | 28277260 | - | Ftri15G18830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 61,091.71 Da | 28.91 | 104.85 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 257 | 350 | 7.63199E-18 | - |
| CDD | cd00030 | C2 | 423 | 519 | 4.00894E-26 | - |
| Pfam | PF00168 | C2 domain | 421 | 521 | 7.6E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 241 | 1.0E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 255 | 350 | 4.1E-15 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 253 | 375 | 2.08E-21 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 417 | 540 | 4.46E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 406 | 539 | 3.7E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 251 | 376 | 1.7E-21 | IPR035892 |
| SMART | SM00239 | C2_3c | 422 | 520 | 5.9E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 256 | 347 | 3.4E-15 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 242 | 27.750656 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 236 | 348 | 14.356035 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 401 | 521 | 20.712057 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 464 | 477 | 4.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 494 | 4.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 438 | 450 | 4.7E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_022037992.1 | synaptotagmin-5 [Helianthus annuus] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251UP02 | Putative C2 domain, Synaptotagmin-like mitochondrial-lipid-binding domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0143521 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology