Basic Information
Locus ID:
Ftri15G18536
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 10757478 | 10762202 | - | Ftri15G18536 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 79,324.69 Da | 42.53 | 83.89 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 226 | 359 | 3.49571E-64 | - |
| CDD | cd17920 | DEXHc_RecQ | 25 | 225 | 1.19857E-104 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 259 | 348 | 1.9E-14 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 434 | 2.2E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 40 | 201 | 2.4E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 75 | 371 | 2.64E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 4 | 225 | 1.7E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 226 | 452 | 3.4E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 32 | 234 | 2.9E-32 | IPR014001 |
| SMART | SM00490 | helicmild6 | 269 | 350 | 5.7E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 436 | 2.8E-142 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 44 | 218 | 23.385677 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 245 | 390 | 19.342384 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 710 | - | - |
| Coils | Coil | Coil | 557 | 577 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_022036211.1 | ATP-dependent DNA helicase Q-like 3 [Helianthus annuus] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V593 | ATP-dependent DNA helicase OS=Helianthus annuus OX=4232 GN=RecQl3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology