halophFGD

Basic Information

Locus ID: Ftri15G17708

Species & Taxonomic ID: Flaveria trinervia & 4227

Genome Assembly: GCA_025506515.1

Description: Belongs to the ATG8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr15	15572573	15577299	-	Ftri15G17708

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.47	21,330.39 Da	39.57	90.32	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	81	183	3.99263E-73	-
Pfam	PF15054	Domain of unknown function (DUF4535)	6	37	2.0E-14	IPR027854
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	83	186	4.7E-50	IPR004241
SUPERFAMILY	SSF54236	Ubiquitin-like	73	186	2.58E-43	IPR029071
Gene3D	G3DSA:3.10.20.90	-	59	186	2.8E-58	-

KEGG Pathway

KO Term:

K08341 (GABA(A) receptor-associated protein)

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G16520.1	Ubiquitin-like superfamily protein.
RefSeq	XP_022021474.1	autophagy-related protein 8f [Helianthus annuus]
Swiss-Prot	Q8VYK7	Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1
TrEMBL	A0A2U1L5N7	Autophagy-related protein OS=Artemisia annua OX=35608 GN=CTI12_AA516740 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	4	Ah004807, Ah012110, Ah018224, Ah027216
Amaranthaceae	Beta vulgaris	1	BVRB_6g150640
Amaranthaceae	Suaeda glauca	3	Sgl11008, Sgl16416, Sgl16713
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.3AG0008730, CQ.Regalona.r1.5AG0000190 ... CQ.Regalona.r1.5BG0000220
Arecaceae	Cocos nucifera	3	COCNU_04G002610, COCNU_12G007150, scaffold017943G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103696357, gene-LOC103704726
Asteraceae	Flaveria trinervia	5	Ftri15G17708, Ftri16G19574, Ftri2G13142, Ftri2G13868 ... Ftri3G02999
Brassicaceae	Arabidopsis thaliana	2	AT2G35736.1, AT4G25225.1
Brassicaceae	Brassica nigra	4	BniB01g008800.2N, BniB02g081670.2N, BniB05g012010.2N ... BniB05g019780.2N
Plantaginaceae	Plantago ovata	1	Pov_00012442
Plumbaginaceae	Limonium bicolor	2	Lb1G01883, Lb1G01884
Poaceae	Echinochloa crus-galli	7	AH05.933, BH08.358, BH08.359, CH03.898, CH05.992, CH08.446 ... CH08.447
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_8AG0617860, gene-QOZ80_8AG0617880 ... gene-QOZ80_8BG0645400, gene-QOZ80_8BG0645410
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0010930.1.CDS1 ... HORVU.MOREX.r3.5HG0420900.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_032607, gene-QYE76_042775, gene-QYE76_048282 ... gene-QYE76_048286, gene-QYE76_059359
Poaceae	Oryza coarctata	3	Oco09G001020, Oco10G001020, Oco13G004270
Poaceae	Oryza sativa	4	LOC_Os05g02740.1, LOC_Os07g13534.1, LOC_Os08g05970.1 ... LOC_Os08g05980.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G107900, gene-BS78_03G308600 ... gene-BS78_07G048800, gene-BS78_07G048900, gene-BS78_09G023400
Poaceae	Sporobolus alterniflorus	7	Chr16G001360, Chr17G001300, Chr18G002260, Chr19G015830 ... Chr22G016200, Chr24G004200, Chr28G003630
Poaceae	Thinopyrum elongatum	4	Tel1E01G112300, Tel5E01G027500, Tel6E01G532900 ... Tel7E01G529300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG007130, gene_TRIDC1BG009100 ... gene_TRIDC5AG001970, gene_TRIDC5BG006220, gene_TRIDC6AG044600, gene_TRIDC7AG042030, gene_TRIDC7BG033170
Poaceae	Triticum aestivum	9	TraesCS1A02G051900.1.cds1, TraesCS1B02G068700.1.cds1 ... TraesCS1D02G053900.1, TraesCS5A02G012200.1.cds1, TraesCS5B02G037700.1.cds1, TraesCS6A02G292600.1.cds1, TraesCS6B02G323000.1.cds1, TraesCS6D02G273700.1.cds1, TraesCS7A02G300900.1.cds1
Poaceae	Zea mays	4	Zm00001eb094930_P001, Zm00001eb172610_P001 ... Zm00001eb265740_P001, Zm00001eb303930_P001
Poaceae	Zoysia japonica	7	nbis-gene-18323, nbis-gene-26584, nbis-gene-39074 ... nbis-gene-39075, nbis-gene-49391, nbis-gene-55012, nbis-gene-59230
Poaceae	Zoysia macrostachya	3	Zma_g27607, Zma_g4944, Zma_g6211
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.3551, evm.TU.LG16.28, evm.TU.LG17.888
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.60393.12, evm.TU.Scaffold_11_RagTag.1548
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12465, nbisL1-mrna-12574, nbisL1-mrna-18021 ... nbisL1-mrna-22563, nbisL1-mrna-8644
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20258
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12842, nbisL1-mrna-15142, nbisL1-mrna-8376
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10750, nbisL1-mrna-22733, nbisL1-mrna-6551 ... nbisL1-mrna-8908
Salicaceae	Populus euphratica	2	populus_peu03363, populus_peu03377
Solanaceae	Lycium barbarum	2	gene-LOC132635083, gene-LOC132638761
Solanaceae	Solanum pennellii	2	gene-LOC107021415, gene-LOC107026839
Tamaricaceae	Reaumuria soongarica	3	gene_14080, gene_8990, gene_8991
Tamaricaceae	Tamarix chinensis	1	TC01G3869
Zosteraceae	Zostera marina	1	Zosma06g03670.v3.1