halophFGD

Basic Information

Locus ID: Ftri15G17613

Species & Taxonomic ID: Flaveria trinervia & 4227

Genome Assembly: GCA_025506515.1

Description: Belongs to the DEAD box helicase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr15	10614533	10615267	-	Ftri15G17613

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.56	18,547.25 Da	37.39	92.55	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	1	135	6.42E-11	IPR027417
Gene3D	G3DSA:3.40.50.300	-	1	58	2.0E-9	IPR027417
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	1	51	10.270163	IPR014001
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	3	11	-	IPR000629

KEGG Pathway

KO Term:

K03257 (translation initiation factor 4A)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G72730.1	DEA(D/H)-box RNA helicase family protein.
RefSeq	XP_022036233.1	eukaryotic initiation factor 4A-15 [Helianthus annuus]
Swiss-Prot	Q40469	Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	A0A7J0F9C0	Eif4a-2 OS=Actinidia rufa OX=165716 GN=Acr_10g0005880 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg18030, jg23950, jg27270, jg36647, jg36903, jg4590, jg4640 ... jg7945
Aizoaceae	Mesembryanthemum crystallinum	4	gene_6755, gene_8081, gene_8082, gene_9431
Amaranthaceae	Atriplex hortensis	2	Ah015581, Ah034500
Amaranthaceae	Beta vulgaris	3	BVRB_2g034400, BVRB_8g189830, BVRB_9g203030
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg19755, Sbi_jg19756, Sbi_jg23471, Sbi_jg23473 ... Sbi_jg59412, Sbi_jg63236
Amaranthaceae	Salicornia europaea	3	Seu_jg17278, Seu_jg17279, Seu_jg23657
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011237, GOSA_00028107, GOSA_00028109
Amaranthaceae	Suaeda glauca	4	Sgl43089, Sgl47901, Sgl63656, Sgl68153
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000011237, gene:ENSEOMG00000016890 ... gene:ENSEOMG00000018752, gene:ENSEOMG00000019246, gene:ENSEOMG00000019465, gene:ENSEOMG00000020731, gene:ENSEOMG00000031858, gene:ENSEOMG00000045672, gene:ENSEOMG00000050432, gene:ENSEOMG00000051256
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0014060, CQ.Regalona.r1.2AG0014070 ... CQ.Regalona.r1.2BG0016020, CQ.Regalona.r1.2BG0016030, CQ.Regalona.r1.8AG0013490, CQ.Regalona.r1.8BG0014820
Anacardiaceae	Pistacia vera	5	pistato.v30117410, pistato.v30224710, pistato.v30224730 ... pistato.v30259600, pistato.v30261340
Apiaceae	Apium graveolens	7	Ag5G01561, Ag7G00390, Ag7G01853, Ag8G00261, Ag8G01983 ... AgUnG00091, AgUnG00092
Arecaceae	Cocos nucifera	6	COCNU_02G001330, COCNU_02G019540, COCNU_03G015520 ... COCNU_09G006150, COCNU_11G013450, COCNU_11G013460
Arecaceae	Phoenix dactylifera	7	gene-LOC103702037, gene-LOC103709577, gene-LOC103713107 ... gene-LOC103713109, gene-LOC103715524, gene-LOC103717373, gene-LOC103723891
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2362.V1.1, AsparagusV1_01.621.V1.1 ... AsparagusV1_05.2352.V1.1, AsparagusV1_06.1043.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G30554, Ftri15G17613, Ftri3G12718, Ftri3G20538 ... Ftri4G15456, Ftri7G08567, Ftri8G25313
Brassicaceae	Arabidopsis thaliana	5	AT1G51380.1, AT1G54270.1, AT1G72730.1, AT3G13920.2 ... AT3G19760.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10011528m.g.v1.0, Thhalv10011544m.g.v1.0 ... Thhalv10018626m.g.v1.0, Thhalv10020824m.g.v1.0, Thhalv10020832m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g38030.v2.2, Sp1g40700.v2.2, Sp3g12160.v2.2 ... Sp3g17780.v2.2, Sp5g27790.v2.2
Brassicaceae	Brassica nigra	13	BniB01g044200.2N, BniB01g051250.2N, BniB01g055170.2N ... BniB02g063060.2N, BniB03g050960.2N, BniB05g070020.2N, BniB06g026370.2N, BniB07g001610.2N, BniB07g004620.2N, BniB07g030750.2N, BniB07g030780.2N, BniB07g051010.2N, BniB07g055250.2N
Casuarinaceae	Casuarina equisetifolia	10	Ceq01G0301, Ceq01G0309, Ceq02G0842, Ceq03G2284, Ceq05G0696 ... Ceq06G0836, Ceq06G1704, Ceq06G2354, Ceq09G0627, Ceq09G0628
Casuarinaceae	Casuarina glauca	10	Cgl01G0321, Cgl02G0856, Cgl03G2420, Cgl05G0707, Cgl06G0861 ... Cgl06G1766, Cgl06G2478, Cgl09G0671, Cgl09G0672, Cgl09G0684
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno12g04520, gene.Cymno13g02290, gene.Cymno17g04600
Dunaliellaceae	Dunaliella salina	3	Dusal.0006s00020.v1.0, Dusal.0552s00009.v1.0 ... Dusal.0888s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03840, gene.Thate02g00760, gene.Thate05g18780
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-231, nbisL1-mrna-3338, nbisL1-mrna-4598 ... nbisL1-mrna-7482, nbisL1-mrna-9392
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.89, evm.TU.LG03.943, evm.TU.LG07.1262 ... evm.TU.LG07.652
Plantaginaceae	Plantago ovata	3	Pov_00003711, Pov_00013441, Pov_00015332
Plumbaginaceae	Limonium bicolor	9	Lb0G36968, Lb2G08398, Lb2G14201, Lb2G14216, Lb3G16956 ... Lb3G16957, Lb3G18035, Lb3G18041, Lb4G21541
Poaceae	Echinochloa crus-galli	12	AH06.2865, AH07.361, AH07.4042, AH07.880, BH06.2663 ... BH07.1009, BH07.3856, CH01.1256, CH03.4462, CH06.2976, CH07.3921, CH07.761
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0101490, gene-QOZ80_2AG0151600 ... gene-QOZ80_2BG0154870, gene-QOZ80_2BG0206970, gene-QOZ80_4AG0307350, gene-QOZ80_5AG0399360, gene-QOZ80_5BG0448050, gene-QOZ80_6AG0549840, gene-QOZ80_6BG0503410
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0210840.1, HORVU.MOREX.r3.6HG0558540.1 ... HORVU.MOREX.r3.6HG0633530.1, HORVU.MOREX.r3.7HG0702610.1, HORVU.MOREX.r3.7HG0727510.1
Poaceae	Lolium multiflorum	7	gene-QYE76_006390, gene-QYE76_006463, gene-QYE76_008284 ... gene-QYE76_020352, gene-QYE76_021631, gene-QYE76_035484, gene-QYE76_035764
Poaceae	Oryza coarctata	11	Oco01G015450, Oco02G015790, Oco03G002380, Oco03G005800 ... Oco03G005810, Oco04G002300, Oco04G006020, Oco06G017810, Oco11G016450, Oco12G016700, Oco21G004410
Poaceae	Paspalum vaginatum	5	gene-BS78_03G064300, gene-BS78_03G064700 ... gene-BS78_04G036500, gene-BS78_04G090300, gene-BS78_10G253900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0401086, Pt_Chr0604848, Pt_Chr0605387
Poaceae	Sporobolus alterniflorus	13	Chr02G032810, Chr04G019820, Chr05G001030, Chr06G020750 ... Chr06G035000, Chr09G026920, Chr0G010140, Chr10G021450, Chr11G001120, Chr13G000230, Chr15G026290, Chr19G007120, Chr27G009790
Poaceae	Thinopyrum elongatum	8	Tel2E01G942100, Tel5E01G690000, Tel6E01G254100 ... Tel6E01G368300, Tel6E01G775100, Tel6E01G775300, Tel7E01G532700, Tel7E01G703700
Poaceae	Triticum dicoccoides	9	gene_TRIDC6AG015330, gene_TRIDC6AG027230 ... gene_TRIDC6AG027280, gene_TRIDC6AG061100, gene_TRIDC6BG021100, gene_TRIDC6BG033410, gene_TRIDC6BG071460, gene_TRIDC7AG058390, gene_TRIDC7BG051060
Poaceae	Triticum aestivum	19	TraesCS2A02G552800.1, TraesCS2B02G584200.1 ... TraesCS2D02G553400.1, TraesCS2D02G554300.1, TraesCS6A02G116200.1, TraesCS6A02G186600.1, TraesCS6A02G186800.1, TraesCS6A02G416700.1, TraesCS6B02G144000.1, TraesCS6B02G217700.1, TraesCS6B02G217800.1, TraesCS6B02G472700.1, TraesCS6D02G105000.1, TraesCS6D02G173700.3, TraesCS6D02G401900.1, TraesCS7A02G310000.1, TraesCS7A02G419400.1, TraesCS7B02G320000.1, TraesCS7D02G412200.1
Poaceae	Zea mays	6	Zm00001eb190630_P001, Zm00001eb226920_P001 ... Zm00001eb232200_P002, Zm00001eb240040_P001, Zm00001eb259470_P001, Zm00001eb272920_P004
Poaceae	Zoysia japonica	6	nbis-gene-29965, nbis-gene-33746, nbis-gene-34308 ... nbis-gene-40699, nbis-gene-47426, nbis-gene-9633
Poaceae	Zoysia macrostachya	6	Zma_g12187, Zma_g14948, Zma_g17479, Zma_g26194, Zma_g31084 ... Zma_g33349
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.1988, evm.TU.LG05.2220, evm.TU.LG07.802 ... evm.TU.LG08.1559, evm.TU.LG14.287, evm.TU.LG15.127, evm.TU.LG19.20, evm.TU.LG22.453, evm.TU.LG24.250
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g10950, gene.Posoc10g04890
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.1375 ... evm.TU.Scaffold_10_RagTag.694, evm.TU.Scaffold_15_RagTag.341, evm.TU.Scaffold_17_RagTag.669, evm.TU.Scaffold_18_RagTag.687, evm.TU.Scaffold_4_RagTag.1818
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-13797, nbisL1-mrna-17178, nbisL1-mrna-23352 ... nbisL1-mrna-25759, nbisL1-mrna-26612, nbisL1-mrna-27630, nbisL1-mrna-27668, nbisL1-mrna-27671, nbisL1-mrna-27709, nbisL1-mrna-7111
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-14506, nbisL1-mrna-7676, nbisL1-mrna-8093 ... nbisL1-mrna-8888, nbisL1-mrna-8954
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-19994, nbisL1-mrna-4611, nbisL1-mrna-8066 ... nbisL1-mrna-8747, nbisL1-mrna-8945
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.210, evm.TU.utg000004l.50 ... evm.TU.utg000008l.1027, evm.TU.utg000013l.359, evm.TU.utg000023l.38, evm.TU.utg000033l.487
Rhizophoraceae	Kandelia obovata	6	Maker00000055, Maker00004182, Maker00004381, Maker00004787 ... Maker00014572, Maker00018900
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10750, nbisL1-mrna-13992, nbisL1-mrna-14858 ... nbisL1-mrna-16464, nbisL1-mrna-18333, nbisL1-mrna-3900
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-1116, nbisL1-mrna-14378, nbisL1-mrna-14846 ... nbisL1-mrna-22898, nbisL1-mrna-2625, nbisL1-mrna-8022, nbisL1-mrna-8172
Salicaceae	Populus euphratica	11	populus_peu02609, populus_peu02613, populus_peu12625 ... populus_peu13947, populus_peu22056, populus_peu22065, populus_peu23152, populus_peu24345, populus_peu26593, populus_peu28337, populus_peu37881
Solanaceae	Lycium barbarum	7	gene-LOC132604232, gene-LOC132604234, gene-LOC132613923 ... gene-LOC132619740, gene-LOC132635930, gene-LOC132640847, gene-LOC132645464
Solanaceae	Solanum chilense	5	SOLCI000318900, SOLCI001353000, SOLCI002413600 ... SOLCI003389300, SOLCI003577100
Solanaceae	Solanum pennellii	6	gene-LOC107004776, gene-LOC107007006, gene-LOC107007007 ... gene-LOC107022595, gene-LOC107024598, gene-LOC107028541
Tamaricaceae	Reaumuria soongarica	6	STRG.21618_chr08_-, STRG.32344_chr09_-, STRG.8158_chr05_- ... gene_14265, gene_3999, gene_505
Tamaricaceae	Tamarix chinensis	5	TC02G1339, TC05G0391, TC05G1664, TC06G2628, TC11G1425
Zosteraceae	Zostera marina	4	Zosma04g15770.v3.1, Zosma04g15790.v3.1, Zosma05g19360.v3.1 ... Zosma06g26830.v3.1