Basic Information
Locus ID:
Ftri15G14815
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 10814134 | 10817968 | + | Ftri15G14815 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 43,891.81 Da | 41.06 | 70.75 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 1.96721E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 134 | 209 | 3.79465E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 256 | 321 | 4.0E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 206 | 2.4E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 1.6E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 245 | 321 | 2.58E-18 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 47 | 212 | 2.79E-39 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 230 | 328 | 6.3E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 131 | 1.5E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 132 | 212 | 9.0E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 4.3E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 134 | 208 | 2.1E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 255 | 324 | 1.9E-12 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 254 | 321 | 13.515437 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 212 | 13.958878 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 14.521706 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 249 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021969470.1 | oligouridylate-binding protein 1 [Helianthus annuus] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6M3R4 | Oligouridylate-binding protein 1-like OS=Mikania micrantha OX=192012 GN=E3N88_36302 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology