Basic Information
Locus ID:
Ftri15G13338
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 11206394 | 11210254 | + | Ftri15G13338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 30,060.41 Da | 47.63 | 59.39 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 191 | 233 | 3.1E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 12 | 43 | 1.6E-8 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 239 | 2.65E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 239 | 1.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 11.928664 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10815.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022036179.1 | probable E3 ubiquitin-protein ligase RHC1A [Helianthus annuus] | 0 |
| Q9BV68 | E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251V2A8 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0125581 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology