Basic Information
Locus ID:
Ftri15G09924
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 30040154 | 30046438 | + | Ftri15G09924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 118,710.26 Da | 36.43 | 78.02 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 520 | 7.32E-19 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 489 | 904 | 6.83E-34 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 922 | 1050 | 5.49E-7 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 488 | 1.1E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 757 | 1049 | 2.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 489 | 706 | 5.4E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 342 | 382 | 8.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 0.97 | IPR001680 |
| SMART | SM00320 | WD40_4 | 948 | 989 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 788 | 826 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 567 | 31.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.4E-11 | IPR006595 |
| SMART | SM00320 | WD40_4 | 829 | 869 | 2.3 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 4.9E-6 | IPR006594 |
| SMART | SM00320 | WD40_4 | 449 | 490 | 0.048 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 911 | 3.3 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.709808 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 35 | 92 | 12.46347 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1079 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1050 | 1079 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_024965486.1 | topless-related protein 4-like isoform X1 [Cynara cardunculus var. scolymus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251UMJ5 | Putative LIS1 homology motif protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0138561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology