Basic Information
Locus ID:
Ftri15G09246
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 26559699 | 26561005 | + | Ftri15G09246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 40,142.46 Da | 30.71 | 82.52 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 30 | 341 | 2.40059E-130 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 38 | 337 | 1.0E-66 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 243 | 308 | 6.11E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 337 | 6.99E-65 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 39 | 337 | 2.5E-93 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 242 | 308 | 2.5E-93 | IPR029070 |
| SMART | SM00636 | 2g34 | 27 | 337 | 1.1E-74 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 15 | 353 | 54.541794 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 113 | 121 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_022037813.1 | nod factor hydrolase protein 1 [Helianthus annuus] | 0 |
| A0A072VEP0 | Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6M4X2 | GH18 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_35853 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology