Basic Information
Locus ID:
Ftri15G08896
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 26749523 | 26750984 | + | Ftri15G08896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 29,906.59 Da | 40.59 | 73.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 31 | 267 | 1.4E-58 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 264 | 7.54E-65 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 28 | 269 | 4.4E-79 | - |
| SMART | SM00636 | 2g34 | 28 | 269 | 1.1E-40 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 269 | 55.262871 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 135 | 143 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_022037816.1 | class V chitinase CHIT5b-like isoform X1 [Helianthus annuus] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6M291 | GH18 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_35867 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology