Basic Information
Locus ID:
Ftri15G06633
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 10531941 | 10535012 | - | Ftri15G06633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 38,895.63 Da | 30.21 | 91.31 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 30 | 292 | 8.8E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 30 | 292 | 7.39E-54 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 294 | 349 | 8.5E-7 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 57 | 356 | 1.3E-110 | IPR027417 |
| SMART | SM00382 | AAA_5 | 80 | 253 | 3.4E-7 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 27 | 348 | 3.6E-134 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 58 | 217 | 38.215286 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 221 | 297 | 25.855576 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 238 | 246 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 116 | 145 | 1.4E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 322 | 339 | 1.4E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 235 | 263 | 1.4E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 188 | 217 | 1.4E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 150 | 179 | 1.4E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 268 | 297 | 1.4E-74 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 27 | 354 | 42.322479 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021970424.1 | DNA repair protein recA homolog 3, mitochondrial isoform X2 [Helianthus annuus] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251ULA1 | Putative recA DNA recombination family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr06g0178581 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology