Basic Information
Locus ID:
Ftri15G06539
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
transport protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 3545966 | 3548400 | + | Ftri15G06539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 40,683.86 Da | 47.81 | 91.09 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 135 | 0.073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 320 | 5.22E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 321 | 5.5E-88 | IPR015943 |
| SMART | SM00320 | WD40_4 | 95 | 135 | 7.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 232 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 319 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 185 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 24 | 64 | 83.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 285 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 136 | 9.940341 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.3 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_043619010.1 | protein transport protein SEC31 homolog B-like isoform X2 [Erigeron canadensis] | 0 |
| Q8L611 | Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1 | 0 | |
| TrEMBL | A0A251S1X3 | Putative transducin family protein / WD-40 repeat family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0524831 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06539 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.4557 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020038 |
| Poaceae | Oryza coarctata | 1 | Oco03G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03990.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201384, Pt_Chr0201412, Pt_Chr0201414, Pt_Chr0305667 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19408 |