Basic Information
Locus ID:
Ftri15G05747
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 115411738 | 115415499 | - | Ftri15G05747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 82,676.54 Da | 41.73 | 92.35 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 355 | 656 | 8.30585E-149 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 339 | 1.88159E-167 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 362 | 651 | 4.7E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 657 | 5.49E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 337 | 1.78E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 656 | 3.6E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 39 | 338 | 3.1E-35 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 340 | 34.191368 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 657 | 32.364346 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 734 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_022020643.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Helianthus annuus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5N6LZZ0 | glycerophosphodiester phosphodiesterase OS=Mikania micrantha OX=192012 GN=E3N88_35065 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology