Basic Information
Locus ID:
Ftri15G04999
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 14341513 | 14343048 | + | Ftri15G04999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 39,923.99 Da | 75.65 | 60.53 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 169 | 210 | 2.5735E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 5 | 36 | 1.1E-10 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 168 | 210 | 2.9E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 233 | 335 | 7.5E-35 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 216 | 2.1E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 216 | 5.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 209 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 210 | 11.869652 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_022037315.1 | E3 ubiquitin-protein ligase RDUF2 [Helianthus annuus] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6M5L4 | RING-type E3 ubiquitin transferase OS=Mikania micrantha OX=192012 GN=E3N88_36103 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology