Basic Information
Locus ID:
Ftri15G02983
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 1383731 | 1390594 | + | Ftri15G02983 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 93,892.01 Da | 59.22 | 80.07 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 616 | 649 | 4.2E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 221 | 332 | 9.5E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 226 | 358 | 6.01E-13 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 743 | 795 | 7.11E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 589 | 651 | 9.92E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 735 | 800 | 6.1E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 606 | 669 | 3.0E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 163 | 364 | 8.8E-21 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 588 | 652 | 0.0038 | IPR014720 |
| SMART | SM00577 | forpap2 | 182 | 343 | 1.9E-13 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 587 | 653 | 11.188538 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 201 | 356 | 13.55432 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 730 | 784 | 9.052224 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 808 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_022036027.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Helianthus annuus] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V4S5 | protein-serine/threonine phosphatase OS=Helianthus annuus OX=4232 GN=CPL1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology