Basic Information
Locus ID:
Ftri15G02755
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 5475722 | 5479938 | + | Ftri15G02755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 39,291.84 Da | 46.09 | 74.11 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 285 | 333 | 1.2E-10 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 46 | 255 | 2.62E-28 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 271 | 339 | 1.97E-16 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 268 | 345 | 1.9E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 45 | 259 | 3.6E-11 | IPR027267 |
| SMART | SM00326 | SH3_2 | 281 | 336 | 6.0E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 278 | 337 | 19.520224 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 303 | 319 | 3.8E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 283 | 303 | 3.8E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 319 | 332 | 3.8E-5 | - |
| Coils | Coil | Coil | 147 | 174 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 190 | 210 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18060.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_022035292.1 | SH3 domain-containing protein 3 [Helianthus annuus] | 0 |
| Q8L7W0 | SH3 domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=SH3P3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6M4L9 | SH3 domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_36735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22213 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_516 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016678, Ah038605 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40531, Sbi_jg50567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018066 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl45154, Sgl45157, Sgl45271, Sgl49942, Sgl50053 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010040, gene:ENSEOMG00000032542 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008400, CQ.Regalona.r1.8BG0009500 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30070700, pistato.v30243060 |
| Apiaceae | Apium graveolens | 1 | Ag8G00825 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012240 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1154.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G02755 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025600m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g072240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0424 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0521 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12092 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.714 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038412 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14544 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.3111, AH07.114, BH03.3295, CH03.3480 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568640, gene-QOZ80_7BG0599950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041124 |
| Poaceae | Oryza coarctata | 2 | Oco13G008250, Oco14G008720 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G288700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304161, Pt_Chr0405483 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G005870, Chr24G008230, Chr27G011430, Chr28G007550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G419800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030240, gene_TRIDC2BG033910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G226200.1, TraesCS2B02G249500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105750_P001, Zm00001eb331320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-929 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.139, evm.TU.LG26.910 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g17680, gene.Posoc04g21580, gene.Posoc10g03620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.851 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5491 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17176 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.64 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11079 |
| Salicaceae | Populus euphratica | 2 | populus_peu00964, populus_peu17951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622159 |
| Solanaceae | Solanum chilense | 1 | SOLCI004243600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008662 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5809 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2834 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23010.v3.1 |