Basic Information
Locus ID:
Ftri15G02660
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 53242045 | 53253382 | + | Ftri15G02660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 97,938.75 Da | 47.35 | 79.78 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 700 | 855 | 2.62752E-61 | - |
| Pfam | PF06337 | DUSP domain | 33 | 138 | 9.0E-20 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 306 | 854 | 1.1E-81 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 304 | 857 | 7.85E-107 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 138 | 1.02E-21 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 152 | 237 | 2.5E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 625 | 862 | 3.8E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 295 | 530 | 2.0E-61 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 1 | 151 | 3.8E-33 | - |
| SMART | SM00695 | dusp | 29 | 141 | 9.4E-24 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 306 | 857 | 56.282677 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 10 | 138 | 15.563009 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 799 | 816 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 307 | 322 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 83 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_024965661.1 | ubiquitin carboxyl-terminal hydrolase 5-like isoform X1 [Cynara cardunculus var. scolymus] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6M1W2 | Ubiquitin carboxyl-terminal hydrolase OS=Mikania micrantha OX=192012 GN=E3N88_35658 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology