Basic Information
Locus ID:
Ftri15G01385
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 1070986 | 1077404 | - | Ftri15G01385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 102,538.80 Da | 50.55 | 82.02 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 293 | 1.24035E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 86 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 252 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 2.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 212 | 3.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 3.4E-10 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 770 | 927 | 1.5E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 293 | 4.58E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 170 | 1.7E-48 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 171 | 365 | 8.5E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 7.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 5.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 6.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 2.5E-12 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 18.1278 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.896486 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 11.971952 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.943775 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 1.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 1.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.8E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 930 | 19.221247 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 757 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_022036193.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3 [Helianthus annuus] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V2B9 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0125681 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology