Basic Information
Locus ID:
Ftri15G01300
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 3350153 | 3352137 | - | Ftri15G01300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 41,577.28 Da | 46.17 | 88.32 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 99 | 2.1E-14 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 169 | 231 | 3.5E-9 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 330 | 373 | 1.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 375 | 3.53E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 377 | 1.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 331 | 372 | 5.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 331 | 373 | 12.149959 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022035657.1 | putative RING-H2 finger protein ATL21A [Helianthus annuus] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A251V3Q8 | Putative RING/U-box superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0120211 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology