Basic Information
Locus ID:
Ftri14G31530
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Short Name:
NTMC2T2.1
Description:
Calcium lipid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 100671052 | 100679139 | - | Ftri14G31530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 63,185.38 Da | 30.19 | 105.66 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 447 | 533 | 8.38967E-22 | - |
| CDD | cd00030 | C2 | 274 | 376 | 2.84486E-24 | - |
| Pfam | PF00168 | C2 domain | 272 | 376 | 2.7E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 82 | 258 | 3.9E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 445 | 533 | 1.1E-14 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 270 | 402 | 9.68E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 441 | 550 | 5.69E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 265 | 400 | 1.0E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 431 | 549 | 1.1E-25 | IPR035892 |
| SMART | SM00239 | C2_3c | 446 | 530 | 4.2E-16 | IPR000008 |
| SMART | SM00239 | C2_3c | 273 | 373 | 2.4E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 388 | 531 | 11.550863 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 77 | 259 | 28.079268 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 253 | 374 | 20.13682 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_022027410.1 | synaptotagmin-5 [Helianthus annuus] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251V3W1 | Putative calcium-dependent lipid-binding (CaLB domain) family protein OS=Helianthus annuus OX=4232 GN=SYTE PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology