Basic Information
Locus ID:
Ftri14G29928
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 13774173 | 13774852 | + | Ftri14G29928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 23,588.54 Da | 45.92 | 85.52 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 26 | 70 | 1.01585E-27 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 27 | 68 | 1.9E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 81 | 1.06E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 80 | 2.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 28 | 68 | 3.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 28 | 69 | 13.094151 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 112 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024959916.1 | RING finger protein 5-like [Cynara cardunculus var. scolymus] | 0 |
| Q96GF1 | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A103Y3U2 | RING-type E3 ubiquitin transferase OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_019743 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology