Basic Information
Locus ID:
Ftri14G26220
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 24257191 | 24268756 | - | Ftri14G26220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 137,890.23 Da | 47.79 | 80.98 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 427 | 629 | 3.78035E-105 | - |
| CDD | cd18794 | SF2_C_RecQ | 630 | 771 | 2.02023E-69 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 441 | 609 | 3.0E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1035 | 1094 | 1.7E-10 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 655 | 761 | 5.6E-17 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 830 | 867 | 1.5E-7 | IPR032284 |
| Pfam | PF09382 | RQC domain | 874 | 989 | 2.9E-23 | IPR018982 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 875 | 986 | 3.81E-18 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 479 | 782 | 2.0E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1033 | 1099 | 2.83E-11 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 403 | 629 | 4.6E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 874 | 984 | 1.5E-21 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1027 | 1103 | 2.2E-13 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 630 | 869 | 2.3E-60 | IPR027417 |
| SMART | SM00490 | helicmild6 | 681 | 762 | 1.5E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 876 | 987 | 1.8E-29 | IPR018982 |
| SMART | SM00487 | ultradead3 | 435 | 638 | 6.4E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 431 | 788 | 3.2E-146 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 656 | 804 | 19.730778 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1024 | 1104 | 9.464378 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 447 | 622 | 22.392269 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1131 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 989 | 1015 | - | - |
| Coils | Coil | Coil | 291 | 311 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_022027589.1 | ATP-dependent DNA helicase Q-like 4A [Helianthus annuus] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6MY95 | DNA helicase OS=Mikania micrantha OX=192012 GN=E3N88_28004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology