Basic Information
Locus ID:
Ftri14G23598
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8735497 | 8741096 | + | Ftri14G23598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 158,857.34 Da | 35.89 | 105.31 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1180 | 1400 | 6.58205E-121 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 292 | 579 | 2.77386E-98 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 865 | 1157 | 1.25899E-90 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 866 | 1109 | 7.7E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1200 | 1347 | 5.1E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 623 | 674 | 2.0E-8 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 291 | 558 | 2.4E-26 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 283 | 584 | 2.22E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1175 | 1408 | 3.35E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 865 | 1164 | 8.24E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 602 | 790 | 2.48E-31 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 265 | 588 | 7.2E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 826 | 1163 | 6.6E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 599 | 720 | 1.7E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 721 | 814 | 1.3E-12 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1165 | 1418 | 1.1E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 632 | 768 | 0.035 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1208 | 1393 | 1.0E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 291 | 571 | 30.903456 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 605 | 791 | 10.977892 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1182 | 1416 | 17.793917 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 865 | 1145 | 35.603718 | IPR011527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 831 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_022028643.1 | ABC transporter C family member 3 [Helianthus annuus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V8X5 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=ATMRP3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology