Basic Information
Locus ID:
Ftri14G23041
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 6465713 | 6466396 | + | Ftri14G23041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 25,080.69 Da | 37.02 | 93.13 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05158 | RNA polymerase Rpc34 subunit | 118 | 226 | 2.2E-9 | IPR007832 |
| Pfam | PF05158 | RNA polymerase Rpc34 subunit | 13 | 115 | 1.3E-23 | IPR007832 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 11 | 73 | 1.87E-8 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 1 | 71 | 2.5E-11 | IPR036388 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23710.1 | DNA binding;DNA-directed RNA polymerases. | 0 |
| RefSeq | XP_022026999.1 | DNA-directed RNA polymerase III subunit RPC6 [Helianthus annuus] | 0 |
| O94553 | Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251VAH0 | Putative DNA binding,DNA-directed RNA polymerase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0081311 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36957, jg5577 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19264, gene_622 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31325, Sbi_jg57961 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25586 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004474 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54529, Sgl59870 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127940 |
| Apiaceae | Apium graveolens | 2 | Ag1G01146, Ag9G01580 |
| Arecaceae | Cocos nucifera | 2 | scaffold010820G000020, scaffold012968G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724044 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1360.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G23041 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005351m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g076810.2N, BniB07g040580.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0311 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0099s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g21500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.463 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003140, Pov_00013573 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0497900 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.7HG0719600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034960 |
| Poaceae | Oryza coarctata | 1 | Oco12G012520 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g40110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G184000, gene-BS78_10G184400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G029820, Chr05G007490, Chr0G008060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G637700, Tel7E01G637800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb276730_P001, Zm00001eb356740_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10090 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30783 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1261 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g03170, gene.Posoc05g03210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1182 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14684, nbisL1-mrna-6818 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14849 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21751 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000004l.134 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004087 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16335 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21384 |
| Salicaceae | Populus euphratica | 5 | populus_peu04478, populus_peu04517, populus_peu04536 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602065, gene-LOC132610636, gene-LOC132621960 |
| Solanaceae | Solanum chilense | 1 | SOLCI001877000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026877 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19266_chr07_-, gene_16144 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1029, TC09G0526 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05360.v3.1 |