Basic Information
Locus ID:
Ftri14G13482
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 23223294 | 23225299 | - | Ftri14G13482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 34,980.79 Da | 30.57 | 100.06 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 168 | 322 | 4.4142E-67 | - |
| Pfam | PF00190 | Cupin | 37 | 125 | 3.2E-9 | IPR006045 |
| Pfam | PF00190 | Cupin | 166 | 307 | 4.7E-20 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 36 | 313 | 7.82E-31 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 164 | 325 | 1.0E-44 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 21 | 150 | 1.4E-15 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 159 | 308 | 9.2E-20 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 180 | 200 | 1.9E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 245 | 260 | 1.9E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 285 | 302 | 1.9E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 227 | 243 | 1.9E-7 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_022028329.1 | 13S globulin seed storage protein 2 isoform X1 [Helianthus annuus] | 0 |
| Q9ZWA9 | 12S seed storage protein CRD OS=Arabidopsis thaliana OX=3702 GN=CRD PE=1 SV=1 | 0 | |
| TrEMBL | A0A2U1QBI6 | 11-S seed storage protein, RmlC-like cupin domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA009730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology