Basic Information
Locus ID:
Ftri14G11792
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 14134296 | 14135923 | - | Ftri14G11792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 59,947.94 Da | 45.47 | 71.26 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 248 | 292 | 1.0E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 221 | 245 | 0.042 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 426 | 513 | 1.1E-31 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 148 | 308 | 7.1E-29 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 248 | 281 | 1.5E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 245 | 279 | 12.046526 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 149 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_022028235.1 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Helianthus annuus] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A251V6D0 | Putative peptidase S10, serine carboxypeptidase, Alpha/Beta hydrolase fold, DYW domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0072331 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology