Basic Information
Locus ID:
Ftri14G11677
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 6626210 | 6630569 | + | Ftri14G11677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 77,297.70 Da | 53.27 | 73.74 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 171 | 476 | 2.70586E-158 | - |
| Pfam | PF01753 | MYND finger | 79 | 116 | 9.9E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 172 | 475 | 2.4E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 169 | 477 | 1.16E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 77 | 118 | 3.31E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 73 | 120 | 5.2E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 166 | 483 | 1.1E-88 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 172 | 478 | 47.856796 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 79 | 116 | 11.948352 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 79 | 116 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 173 | 188 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 674 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_022028919.1 | ubiquitin carboxyl-terminal hydrolase 18 [Helianthus annuus] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251V9S2 | Putative ubiquitin-specific protease 19 OS=Helianthus annuus OX=4232 GN=UBP19 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology