Basic Information
Locus ID:
Ftri14G10963
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8518330 | 8522354 | - | Ftri14G10963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 31,956.71 Da | 43.97 | 76.67 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 39 | 124 | 4.03651E-46 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 224 | 282 | 1.16884E-7 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 43 | 124 | 5.1E-16 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 135 | 1.96E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 223 | 282 | 5.76E-9 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 25 | 145 | 2.8E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 218 | 282 | 3.2E-5 | IPR036910 |
| SMART | SM01014 | ARID_2 | 34 | 124 | 5.7E-26 | - |
| SMART | SM00501 | bright_3 | 38 | 129 | 6.1E-30 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 37 | 128 | 25.698874 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_022028655.1 | high mobility group B protein 10 [Helianthus annuus] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V8Z4 | Putative ARID DNA-binding domain, High mobility group box domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr03g0077881 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology