Basic Information
Locus ID:
Ftri14G10307
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 4033534 | 4045845 | - | Ftri14G10307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 90,188.12 Da | 42.29 | 89.90 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 527 | 647 | 1.74609E-20 | - |
| Pfam | PF17862 | AAA+ lid domain | 670 | 711 | 9.0E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 529 | 646 | 2.4E-32 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 489 | 718 | 1.0E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 489 | 758 | 3.2E-85 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 648 | 751 | 3.2E-85 | - |
| SMART | SM00382 | AAA_5 | 525 | 649 | 2.3E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 619 | 638 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 191 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_022029397.1 | uncharacterized protein LOC110930405 [Helianthus annuus] | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6MVE1 | AAA domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_26984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology