Basic Information
Locus ID:
Ftri14G09505
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 8760914 | 8767145 | + | Ftri14G09505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 155,382.95 Da | 35.25 | 105.61 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 575 | 765 | 3.04536E-101 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 861 | 1143 | 1.10086E-77 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1166 | 1372 | 2.06827E-107 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 280 | 554 | 8.18308E-91 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 584 | 717 | 1.3E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 321 | 533 | 8.4E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 863 | 1000 | 3.7E-12 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1024 | 1093 | 4.7E-5 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1186 | 1315 | 3.5E-23 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 569 | 787 | 1.46E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1161 | 1379 | 4.48E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 271 | 558 | 2.62E-26 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 860 | 1149 | 2.09E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 253 | 558 | 1.5E-42 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 824 | 1149 | 2.4E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1152 | 1390 | 6.1E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 559 | 809 | 5.9E-72 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1194 | 1365 | 1.2E-4 | IPR003593 |
| SMART | SM00382 | AAA_5 | 592 | 765 | 4.0E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 863 | 1131 | 26.328686 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1168 | 1388 | 13.452202 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 558 | 788 | 23.069332 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 279 | 546 | 26.450377 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 690 | 704 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 833 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_022028643.1 | ABC transporter C family member 3 [Helianthus annuus] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V8X5 | ABC-type xenobiotic transporter OS=Helianthus annuus OX=4232 GN=ATMRP3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology