Basic Information
Locus ID:
Ftri14G02097
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 6169540 | 6175064 | - | Ftri14G02097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 78,452.16 Da | 40.75 | 88.71 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 267 | 400 | 3.51854E-54 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 58 | 266 | 1.94642E-125 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 314 | 390 | 2.5E-12 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 403 | 459 | 2.9E-12 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 585 | 645 | 1.1E-8 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 78 | 245 | 3.1E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 116 | 406 | 8.22E-46 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 579 | 653 | 6.54E-6 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 579 | 649 | 5.4E-12 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 267 | 460 | 1.1E-53 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 464 | 565 | 6.2E-25 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 33 | 266 | 6.5E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 72 | 275 | 1.1E-24 | IPR014001 |
| SMART | SM00490 | helicmild6 | 310 | 391 | 3.1E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 69 | 491 | 3.6E-149 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 266 | 430 | 17.504986 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 84 | 259 | 22.844961 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 576 | 655 | 13.427504 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 690 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_022029071.1 | ATP-dependent DNA helicase Q-like 2 [Helianthus annuus] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V8W9 | ATP-dependent DNA helicase OS=Helianthus annuus OX=4232 GN=RECQL2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology