Basic Information
Locus ID:
Ftri14G00577
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 10176618 | 10178578 | - | Ftri14G00577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 23,782.59 Da | 53.96 | 72.97 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 33 | 76 | 1.46048E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 34 | 75 | 2.0E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 88 | 3.12E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 108 | 7.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 34 | 75 | 7.3E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 76 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 49 | 58 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_022028719.1 | E3 ubiquitin-protein ligase RMA1H1 [Helianthus annuus] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251V800 | RING-type E3 ubiquitin transferase OS=Helianthus annuus OX=4232 GN=ATRMA3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology