Basic Information
Locus ID:
Ftri14G00143
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr14 | 102319597 | 102323802 | + | Ftri14G00143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.06 | 93,876.88 Da | 53.70 | 60.48 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 485 | 614 | 5.83625E-63 | - |
| CDD | cd00201 | WW | 22 | 53 | 9.88104E-6 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 497 | 605 | 1.1E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 294 | 459 | 4.3E-46 | IPR011545 |
| Pfam | PF00397 | WW domain | 21 | 51 | 1.2E-7 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.34E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 338 | 622 | 1.57E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 254 | 474 | 2.0E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 475 | 646 | 2.9E-59 | IPR027417 |
| SMART | SM00456 | ww_5 | 20 | 53 | 5.4E-8 | IPR001202 |
| SMART | SM00487 | ultradead3 | 285 | 488 | 1.4E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 525 | 605 | 3.6E-35 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 297 | 471 | 31.050018 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.7824 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 500 | 644 | 25.501904 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 417 | 425 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 811 | 838 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 856 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021993134.1 | ATP-dependent RNA helicase-like protein DB10 isoform X2 [Helianthus annuus] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6N5X6 | RNA helicase OS=Mikania micrantha OX=192012 GN=E3N88_25344 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology