Basic Information
Locus ID:
Ftri13G33181
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 99792478 | 99796087 | + | Ftri13G33181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 49,906.05 Da | 52.58 | 86.60 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 242 | 289 | 7.46876E-16 | - |
| Pfam | PF12906 | RING-variant domain | 242 | 288 | 6.2E-13 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 292 | 2.98E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 296 | 3.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 241 | 289 | 3.8E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 234 | 295 | 21.729269 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 104 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022026007.1 | uncharacterized protein LOC110926531 isoform X1 [Helianthus annuus] | 0 |
| TrEMBL | A0A251RLZ0 | Putative RING/U-box superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0537201 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology