Basic Information
Locus ID:
Ftri13G32263
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 98701485 | 98748486 | - | Ftri13G32263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 470,083.22 Da | 42.92 | 89.88 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 813 | 916 | 0.00133822 | - |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 568 | 790 | 2.6E-29 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 143 | 383 | 7.8E-67 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 118 | 1.6E-26 | IPR026854 |
| Pfam | PF00169 | PH domain | 812 | 920 | 9.0E-6 | IPR001849 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3166 | 3340 | 3.6E-13 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4069 | 4155 | 2.1E-6 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2192 | 2337 | 3.0E-9 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 802 | 925 | 5.16E-12 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 807 | 924 | 9.5E-8 | IPR011993 |
| SMART | SM00233 | PH_update | 810 | 923 | 3.9E-7 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 809 | 921 | 9.7603 | IPR001849 |
| ProSitePatterns | PS00213 | Lipocalin signature. | 2928 | 2941 | - | IPR022272 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4178 | 4195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1836 | 1855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1838 | 1855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4175 | 4195 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_022020767.1 | uncharacterized protein LOC110920867 [Helianthus annuus] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251RLL3 | Putative pleckstrin (PH) domain superfamily protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0535661 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology