Basic Information
Locus ID:
Ftri13G30603
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 98449230 | 98454858 | + | Ftri13G30603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 107,085.16 Da | 48.50 | 73.96 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 815 | 850 | 3.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 732 | 766 | 0.079 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 646 | 954 | 9.62E-47 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 233 | 490 | 8.73E-11 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 618 | 958 | 4.3E-122 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 231 | 492 | 3.0E-11 | - |
| SMART | SM00320 | WD40_4 | 769 | 808 | 0.76 | IPR001680 |
| SMART | SM00320 | WD40_4 | 812 | 850 | 3.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 683 | 723 | 0.51 | IPR001680 |
| SMART | SM00320 | WD40_4 | 629 | 673 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 921 | 956 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 900 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 727 | 766 | 5.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 819 | 851 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 733 | 775 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 819 | 851 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 690 | 732 | 8.804123 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 837 | 851 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 837 | 851 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 753 | 767 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 710 | 724 | 1.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021988307.1 | protein SPA1-RELATED 2 [Helianthus annuus] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6MQD7 | WD_REPEATS_REGION domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_30698 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology