Basic Information
Locus ID:
Ftri13G30554
Species & Taxonomic ID:
Flaveria trinervia & 4227
Genome Assembly:
GCA_025506515.1
Description:
Eukaryotic initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 102052757 | 102057216 | - | Ftri13G30554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 39,612.33 Da | 34.20 | 97.99 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 209 | 339 | 1.51457E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 21 | 183 | 4.3E-42 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 222 | 330 | 6.5E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 64 | 347 | 1.14E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 205 | 349 | 3.4E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 204 | 1.4E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 249 | 330 | 9.0E-36 | IPR001650 |
| SMART | SM00487 | ultradead3 | 15 | 212 | 7.5E-56 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 1 | 24 | 9.20973 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 27 | 197 | 25.938362 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 208 | 349 | 24.680302 | IPR001650 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_021969790.1 | eukaryotic initiation factor 4A-3 [Helianthus annuus] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6L9C9 | RNA helicase OS=Mikania micrantha OX=192012 GN=E3N88_45372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology